Analysis of trnL- trnL- trnF Intergenic Spacer and matK Sequences Combined with Morphological Observations Showed Pucuk Seminyak from Riau is Champereia manillana var. manillana Merr.

Roslim, Dewi Indriyani and Herman and Budiono, Deanne Yoshe Fidela and Cahyati, Isa Endar and Lestari, Wahyu and Novita, Linda and Priyadi, Arief (2024) Analysis of trnL- trnL- trnF Intergenic Spacer and matK Sequences Combined with Morphological Observations Showed Pucuk Seminyak from Riau is Champereia manillana var. manillana Merr. Journal of Tropical Life Science, 14 (3). ISSN 2087-5517

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Abstract

A taxonomic status of Pucuk Seminyak plant is still unclear. This plant has a fruit like Melinjo (Gnetum gnemon) fruit and is often classified as a member of Gnetaceae family. This study aims to determine the taxonomic status of Pucuk Seminyak from Riau using trnL-trnL-trnF intergenic spacer (IGS) and matK sequences. Methods included leaf samples from three individuals collected from the Kampar Regency, Riau Province, total DNA extraction, electrophoresis, polymerase chain reaction (PCR), and data analysis. The results showed that the trnL-trnL-trnF IGS DNA se quences from the three samples of Pucuk Seminyak were obtained 937 bp length, while the matK had a size of 775 bp. These sequences have been registered in Gen Bank with registration numbers OQ174512, OQ174513, and OQ174514 for trnL trnL-trnF IGS, and OQ174525, OQ174526, and OQ174527 for matK. The highest similarity was found between Pucuk Seminyak and Champereia manillana with an identity value of 99.67% based on trnL-trnL-trnF IGS and 99.74% based on matK. BLASTn analysis by default settings and organism Champereia (taxid: 50116) re sulted in hits on the Champereia genus of the Opiliaceae. Further phylogenetic anal ysis placed the study objects in the Champereia clade (bootstrap support 49 for trnL trnL-trnF, 68 for matK, and 71 for concatenated sequences). Lastly, identification by morphological characters also confirmed that the specimen agreed with the descrip tion and identification key for C. manillana. The species is classified into two varie ties: var. longistaminea and var. manillana. The former was distributed in Southwest China, and the latter was distributed in Malesia to India. Furthermore, the phyloge netic analysis separated the two varieties into different clades. Therefore, it can be concluded that our specimen of Pucuk Seminyak is identified as C. manillana var. manillana Merr. (Opiliaceae).

Item Type: Article
Uncontrolled Keywords: Champereia manillana var. manillana, DNA barcode, matK, Morphol ogy, Pucuk Seminyak, Riau, trnL-trnL-trnF intergenic spacer
Subjects: Medicine & Biology
Depositing User: Mrs Titi Herawati
Date Deposited: 14 Dec 2025 02:34
Last Modified: 14 Dec 2025 02:34
URI: https://karya.brin.go.id/id/eprint/56306

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