Chloroplast Genome of Myristica fragrans : Assembly, Annotation, and Phylogenetic Relationships

Nuroniah, Hani Sitti and Nugroho, Aditya and Indriani, Fitri and Suita, Eliya and Basyah, Bakhtiar and Susanna, Susanna and Darmawan, Ujang Wawan and Lelana, Neo Endra (2025) Chloroplast Genome of Myristica fragrans : Assembly, Annotation, and Phylogenetic Relationships. Forest Science and Technology, 21 (2). pp. 207-214. ISSN 2158-0103

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Abstract

Myristica fragrans is a native and economically significant species in indonesia. However, itscomplete chloroplast genome, particularly from indonesia, has not been previously reported.in this study, we successfully sequenced and assembled the complete chloroplast genome ofM. fragrans using next-generation sequencing technology. the genome has a total length of155,868 bp and exhibits a typical quadripartite structure, consisting of a large single-copy(LSC) region (87,062 bp), a small single-copy (SSC) region (20,664 bp), and a pair of invertedrepeats (iRs) (24,071 bp each). Genome annotation identified 126 genes, including 83protein-coding genes, 8 ribosomal Rna genes, and 35 transfer Rna genes. a total of 141simple sequence repeats (SSRs) were detected, with mononucleotide repeats being the mostprevalent (90.07%). phylogenetic analysis using six Myristica chloroplast genomes and threeoutgroup species confirmed that M. fragrans is most closely related to M. argentea, providingnew insights into the evolutionary relationships within the Myristicaceae family

Item Type: Article
Uncontrolled Keywords: codon usage;Myristicaceae;next-generationsequencing; nutmeg;simple sequence repeat
Subjects: Medicine & Biology
Depositing User: Mrs Titi Herawati
Date Deposited: 12 Oct 2026 04:18
Last Modified: 12 Oct 2026 04:18
URI: https://karya.brin.go.id/id/eprint/60945

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